Open source tools we use in the lab
We are proponents of open science and open code. We strive to make our tools available and want to highlight tools that other have developed that have changed our ability to do efficient, robust, and reproducible research:

Data analysis pipeline:
DataJoint - https://datajoint.io/
https://github.com/datajoint/datajoint-python

Animal tracking:
DeepLabCut - https://github.com/AlexEMG/DeepLabCut

2P imaging analysis:
CaImAn: An open source tool for scalable Calcium Imaging data Analysis
https://github.com/flatironinstitute/CaImAn
SpikeFinder-Elephant:
https://github.com/PTRRupprecht/Spikefinder-Elephant