Open source tools we use in the lab


We are proponents of open science and open code. We strive to make our tools available and want to highlight tools that other have developed that have changed our ability to do efficient, robust, and reproducible research:

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Data analysis pipeline:
DataJoint - https://datajoint.io/
https://github.com/datajoint/datajoint-python

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There are also a number of open source code packages that we use in the lab, i.e. Python, Docker, TensorFlow, numpy, SciPy, Sk-learn, Fiji, OpenCV, Keras (and more). See more on our github: https://github.com/MMathisLab